Notebooks

## Symbolic Dynamics

18 Oct 2018 20:15

A useful method for studying discrete-time dynamical systems with continuous state spaces. The basic idea is to take the state space and partition it into a finite number of regions, each of which you label with some symbol. Each point in the state space then gives you an infinite sequence of symbols: the symbol for the cell of the partition of the original point, the symbol for the cell of its first iterate, its second, and so forth. Normally this involves some loss of information, since you're going from continuous to discrete values. The symbolic dynamics are often stochastic even when the continuous dynamics are deterministic, for starters. So why do this?

One reason is that the dynamics as such are drastically simplified. Let me introduce some notation here. Write $x$ for the continuous state, $f$ for the map, and $\phi$ for the function taking states to symbols. Then the symbol sequence $s = \phi(x) \phi(f(x)) \phi(f^2(x)) \phi(f^3(x)) \ldots$ . Now suppose I started with $f(x)$ instead; my sequence would be $\phi(f(x)) \phi(f^2(x)) \phi(f^3(x)) \ldots$ . So the dynamics on the space of symbol sequences just consists of shifting to the right: $s_0 s_1 s_2 \ldots \mapsto s_1 s_2 \ldots$ . (This is called the shift map.) This is completely trivial. All of the structure in the problem has been shifted from the map to space of sequences. For instance, certain subsequences may not occur at all, or differ in probability. But we have a lot of tools for studying sets of discrete symbol sequences --- not just stochastic process theory, but the theory of formal languages, for instance, so that we can write out the abstract automata which generate the symbol sequences produced by the dynamics.

The other reason for using symbolic dynamics is that there are important cases where one can find generating partitions --- mappings into symbols where there is a one-to-one correspondence between continuous states and the symbol sequences they generate. In these cases, studying the symbolic dynamics is completely equivalent to studying the original dynamics. Remarkably enough, even with a generating partition, the symbolic dynamics can be stochastic for an underlying deterministic system. In this way, for instance, one can show that some kinds of (sufficiently chaotic) deterministic dynamics are in a sense completely equivalent to sources of independent, identically-distributed random variables.

To go off on a tangent, there's something of a movement in cognitive science which sets up an opposition between computation, conceived in the usual symbol-manipulation sense, and continuous nonlinear dynamics. This seems to me quite wrong-headed, if only because the existence of generating partitions shows how symbol-manipulating computation can be completely equivalent to a dynamical system. Computation is intrinsic to dynamics, but that's another topic.

The most fundamental reason I like symbolic dynamics is that I know a lot of tricks for predicting discrete stochastic processes, and want to exploit them as widely as possible.

Recommended:
• R. L. Adler and B. Weiss, "Entropy, a Complete Metric Invariant for Automorphisms of the Torus", Proceedings of the National Academy of Sciences (USA) 57 (1967): 1573--1576 [PDf reprint. Classic and cute, if somewhat specialized, paper.]
• Remo Badii and Antonio Politi, Complexity: Hierarchical Structures and Scaling in Physics [Review, with some more explanation]
• C. Beck and F. Schögl, Thermodynamics of Chaotic Systems [Applying the thermodynamic formalism to symbolic dynamics]
• Peter beim Graben and Harald Atmanspacher, "Complementarity in Classical Dynamical Systems", nlin.CD/0407046 [A really cool, if rather counter-intuitive, result about how one can get something which looks rather like quantum-mechanical "complementarity" (i.e., incompatible observables) from differing symbolic partitions of a single classical dynamical system. I hasten to add that this is not how I think quantum mechanics works, and I'm pretty sure it's not how beim Graben and Atmanspacher think it works.]
• P.-M. Binder and Juan M. Pedraza, "Nonregular Languages in the Kicked Rotor," Physical Review E 62 (2000): R5883--R5886
• Erik Bollt, Pawel Gora, Andrzej Ostruszka, and Karol Zyczkowski, "Basis Markov Partitions and Transition Matrices for Stochastic Systems", arxiv:nlin.CD/0605017
• Erik M. Bollt, Theodore Stanford, Ying-Cheng Lai and Karol Zyczkowski, "What Symbolic Dynamics Do We Get with a Misplaced Partition? On the Validity of Threshold Crossings Analysis of Chaotic Time-Series," Physica D 154 (2001): 259--286 [Short answer: You get really wrong symbolic dynamics.]
• Milena C. Cuellar and P.-M. Binder, "Reducing Noise in Discretized Time Series", Physical Review E 64 (2001): 046211
• Ruslan L. Davidchack, Ying-Cheng Lai, Erik M. Bollt and Mukeshwar Dhamala, "Estimating Generating Partitions of Chaotic Systems by Unstable Periodic Orbits," Physical Review E 61 (2000): 1353--1356
• R. L. Devaney, A First Course in Chaotic Dynamical Systems
• Stefano Galatolo, Mathieu Hoyrup, and Cristóbal Rojas, "Effective symbolic dynamics, random points, statistical behavior, complexity and entropy", arxiv:0801.0209 [All, not almost all, Martin-Lof points are statistically typical.]
• Yoshito Hirata, Kevin Judd and Kazuyuki Aihara, "Characterizing chaotic response of a squid axon through generating partitions", Physics Letters A 346 (2005): 141--147
• Yoshiro Hirata, Kevin Judd and Devin Kilaminster, "Estimating a generating partition from observed time series: Symbolic shadowing", Physical Review E 70 (2004): 016215 [A very elegant answer to "how do we actually find a generating partition then?"]
• Matthew B. Kennel and Michael Buhl, "Estimating good discrete partitions from observed data: symbolic false nearest neighbors", nlin.CD/0304054 = Physical Review Letters 91 (2003): 084102
• Bruce P. Kitchens, Symbolic Dynamics [More algebraic and less dynamical or probabilistic than I'd hoped. But useful.]
• Douglas Lind and Brian Marcus, Introduction to Symbolic Dynamics and Coding
Sort-of recommended:
• Elena S. Dimitrova, John J. McGee, and Reinhard C. Laubenbacher, "Discretization of Time Series Data", q-bio.OT/0505028 [There are some interesting ideas here, and I like that they tested the ability of their discretization method to preserve information (in some sense) within and across time-series. But they don't compare its ability to preserve information with other discretization schemes (say, applying randomly-chosen cut-offs), and gave me no sense of why the scheme itself should work.]
• Jon Aaronson and Hotoshi Nakada, "Exchangeable, Gibbs and equilibrium measures for Markov subshifts", math.PR/0505011
• Fatihcan Atay, Sarika Jalan and Jürgen Jost, "Randomness, chaos, and structure", arxiv:0711.4293
• Rajeev K. Azad, J. Subba Rao, and Ramakrishna Ramaswamy, "Symbol sequence analysis of climatic time signals", Nonlinear Analysis: Real-World Applications 5 (2004): 487--500
• Peter beim Graben, J. Douglas Saddy, Matthias Schlesewsky and Jürgen Kurths, "Symbolic Dynamics of Event-Related Brain Potentials," Physical Review E 62 (2000): 5518--5541
• Camillo Cammarota and Enrico Rogora, "Spectral and symbolic analysis of heart rate data during the tilt test", Physical Review E 74 (2006):
• Julien Cervelle, Enrico Formenti, Pierre Guillon, "Sofic Trace of a Cellular Automaton", math.DS/0703241 [When can the sequence of states at a particular site in a 1D cellular automaton give us a sofic shift, in the sense?]
• J.-R. Chazottes, Z. Coelho, P. Collet
• "Poisson processes for subsystems of finite type in symbolic dynamics", arxiv:0804.2550
• "On the asymptotic measure of periodic subsystems of finite type in symbolic dynamics", arxiv:0804.2551
• J.-R. Chazottes, G. Keller, "Pressure and Equilibrium States in Ergodic Theory", arxiv:0804.2562
• J.-R. Chazottes, L. Ramirez and E. Ugalde, "Finite type approximations of Gibbs measures on sofic subshifts", Nonlinearity 18 (2005): 445--463 [PDF reprint via Dr. Ugalde]
• Jean-Rene Chazottes, Edgardo Ugalde
• "Projection of Markov Measures May be Gibbsian", Journal of Statistical Physics 111 (2003): 1245--1272
• "On the preservation of Gibbsianness under symbol amalgamation", arxiv:0907.0528
• Alex Clark and Lorenzo Sadun, "When size matters: subshifts and their related tiling spaces," math.DS/0201152
• Ethan M. Coven and Zbigniew H. Nitecki, "On the genesis of symbolic dynamics as we know it", math.DS/0611322
• Jean-Charles Delvenne, Petr Kurka and Vincent Blondel, "Computational Universality in Symbolic Dynamical Systems", cs.CC/0404021
• Tomasz Downarowicz
• J. M. Finn, J. D. Goettee, Z. Toroczkai, M. Anghel and B. P. Wood, "Estimation of entropies and dimensions by nonlinear symbolic time series analysis", Chaos 13 (2003): 444--456
• Najah F. Ghalyan, David J. Miller and Asok Ray, "A Locally Optimal Algorithm for Estimating a Generating Partition from an Observed Time Series and Its Application to Anomaly Detection", Neural Computation 30 (2018): 2500--2529
• Bai-lin Hao
• Applied Symbolic Dynamics
• "Applied Symbolic Dynamics," chao-dyn/9806025 [Presumably a resume of the book]
• Yoshito Hirata and Kevin Judd, "Constructing dynamical systems with specified symbolic dynamics", Chaos 15 (2005): 033102
• Detlef Holstein and Holger Kantz, "Optimal Markov approximations and generalized embeddings", Physical Review E 79 (2009): 056202
• Steven Huntsman, "Effective statistical physics of Anosov systems", arxiv:1009.2127
• Sarika Jalan, Fatihcan M. Atay and Jürgen Jost, "Detection of synchronised chaos in coupled map networks using symbolic dynamics", nlin.CD/0510057
• Anders Johansson, Anders Oberg, and Mark Pollicott, "Countable state shifts and uniqueness of g-measures", math.DS/0509109
• Svetlana Katok and Ilie Ugarovici, "Symbolic Dynamics for the Modular Surface and Beyond", Bulletion of the American Mathematical Scoeity 44 (n.s., 2007): 87--132 [PDF]
• Ljupco Kocarev and David M. Walker, "Compactness of Symbolic Sequences from Chaotic Systems," Physics Letters A 274 (2000): 200--205
• Wolfgang Krieger, "On g-functions for subshifts", pp. 306--316 in Dee Denteneer, Frank den Hollander, Evgeny Verbitskiy, eds., Dynamics and Stochastics: Festschrift in honor of M. S. Keane
• Christophe Letellier, "Estimating the Shannon Entropy: Recurrence Plots versus Symbolic Dynamics", Physical Review Letters 96 (2006): 254102
• Kevin McGoff, "Random subshifts of finite type", arxiv:1006.1325
• Diana A. Mendes, Vivaldo M. Mendes, J. Sousa Ramos, "Symbolic Dynamics in a Matching Labour Market Model",nlin.CD/0608002
• George Osipenko, Lectures on Symbolic Analysis of Dynamical Systems [Online PDF]
• Shou-Li Peng and Ke-Fei Cao, Star Products in One-Dimensional Symbolic Dynamics
• Simone Pigolotti, Sandeep Krishna, Mogens H. Jensen, "Symbolic dynamics of biological feedback networks", Physical Review Letters 102 (2009): 088701, arxiv:0806.0276
• Marcus Pivato, "Cellular Automata vs. Quasistrumian Shifts", Ergodic Theory and Dynamical Systems forthcoming (2005) = math.DS/0503502
• David Richeson, Jim Wiseman, "Symbolic dynamics for nonhyperbolic systems", arxiv:0909.0882
• E. Arthur Robinson and Ayse A. Sahin, "On the Existence of Markov Partitions for $\mathbb{Z}^d$ Actions", Journal of the London Mathematical Society 69 (2004): 693--706
• Ben-Zion Rubshtein, "On a class of one-sided Markov shifts", math.DS/0406059
• Peter I. Saparin, Wolfgang Gowin, Jürgen Kurths, and Dieter Felsenber, "Quantification of cancellous bone structure using symbolic dynamics and measures of complexity", Physical Review E 58 (1998): 6449--6459 [Journal link]
• Hiroshi Teramoto and Tamiki Komatsuzaki, "How does a choice of Markov partition affect the resultant symbolic dynamics?", Chaos 20 (2010): 037113 [PDF reprint]
• Roy Wilds and Leon Glass, "Contrasting methods for symbolic analysis of biological regulatory networks", Physical Review E 80 (2009): 062902
• H.-M. Xie, Grammatical Complexity and One-Dimensional Dynamical Systems
• Jisang Yoo, "On Factor Maps that Send Markov Measures to Gibbs Measures", Journal of Statistical Physics (2010): 1055--1070
• Liqiang Zhu, Ying-Cheng Lai, Frank C. Hoppensteadt and Erik M. Bollt, "Numerical and experimental investigation of the effect of filtering on chaotic symbolic dynamics", Chaos 13 (2003): 410--419
Previous versions: 2005-11-13 14:07